- Remove biological metaphors from docstrings (organism, sensory, genetic, nutrient, etc.) - Simplify documentation to be minimal and structured for fast model parsing - Complete SQLite to JSON storage migration (project_manager.py, json_store.py) - Add Integrations and IntegrationHealth classes to json_store.py - Add kill_port() function to server.py for port conflict handling - All 33 tests pass 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>